Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Creb1

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Fed 24 hrs pCREB ChIP-seq
strain
C57BL/6
tissue
liver
chip antibody
Phospho-CREB (Ser133) (87G3) Rabbit mAb #9198

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
crosslinked material was lyzed and sonicated. Chromatin precipitated with antibody and DNA was purified by ethanol precipitation. All the sequencing data were sequenced on NextSeq 500 using NextSeq High V2 chemistry single end.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
25886589
Reads aligned (%)
96.8
Duplicates removed (%)
18.6
Number of peaks
1551 (qval < 1E-05)

mm9

Number of total reads
25886589
Reads aligned (%)
96.6
Duplicates removed (%)
18.6
Number of peaks
1545 (qval < 1E-05)

Base call quality data from DBCLS SRA